PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00366g00045.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family MYB_related
Protein Properties Length: 73aa    MW: 8314.33 Da    PI: 6.5225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00366g00045.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.89.2e-12852345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+ E +++ +a + + ++   +W  Ia+++g g++ +++k ++ 
  Peaxi162Scf00366g00045.1  8 AWTPKENKKFEQALAVYDKDtpdRWQNIAKYVG-GKSVEEVKQHYA 52
                              7********************************.**********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129312.029459IPR017884SANT domain
SMARTSM007179.8E-10557IPR001005SANT/Myb domain
SuperFamilySSF466892.77E-14862IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-7852IPR009057Homeodomain-like
PfamPF002493.0E-10852IPR001005SANT/Myb domain
CDDcd001671.78E-9851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MASNSLSAWT PKENKKFEQA LAVYDKDTPD RWQNIAKYVG GKSVEEVKQH YAVLVEDLKH  60
IESGDVPFPK YST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-30173175RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562162.15e-46PREDICTED: protein RADIALIS-like 1
SwissprotQ1A1734e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLM0ZVX44e-43M0ZVX4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000092771e-42(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-34RAD-like 6